Analysis Type:	PANTHER Enrichment Test (release 20220712)
Annotation Version and Release Date:	Reactome version 65 Released 2021-10-01
Analyzed List:	SDE_Symptomatic_Day_25_vs_Day_18.txt (Sus scrofa)
Correction:	BONFERRONI
Bonferroni count:	1143
Reactome pathways	number	overUnder	pvalue
Metabolism of RNA (R-SSC-8953854)	153	+	0.00E00
Immune System (R-SSC-168256)	415	+	5.58E-12
Processing of Capped Intron-Containing Pre-mRNA (R-SSC-72203)	62	+	2.63E-09
Eukaryotic Translation Initiation (R-SSC-72613)	33	+	3.67E-09
Cap-dependent Translation Initiation (R-SSC-72737)	33	+	3.67E-09
L13a-mediated translational silencing of Ceruloplasmin expression (R-SSC-156827)	32	+	6.39E-09
Gene expression (Transcription) (R-SSC-74160)	231	+	6.47E-09
Adaptive Immune System (R-SSC-1280218)	168	+	8.00E-08
Innate Immune System (R-SSC-168249)	250	+	2.01E-07
mRNA Splicing (R-SSC-72172)	50	+	3.61E-07
Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S (R-SSC-72662)	20	+	4.33E-07
Translation initiation complex formation (R-SSC-72649)	20	+	4.33E-07
Ribosomal scanning and start codon recognition (R-SSC-72702)	20	+	4.33E-07
Cell Cycle (R-SSC-1640170)	109	+	4.54E-07
mRNA Splicing - Major Pathway (R-SSC-72163)	48	+	7.49E-07
Metabolism of proteins (R-SSC-392499)	313	+	8.34E-07
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) (R-SSC-975957)	32	+	1.27E-06
Nonsense-Mediated Decay (NMD) (R-SSC-927802)	32	+	1.27E-06
RNA Polymerase II Transcription (R-SSC-73857)	208	+	1.91E-06
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) (R-SSC-975956)	29	+	2.23E-06
Signaling by Rho GTPases (R-SSC-194315)	146	+	2.79E-06
Signaling by Rho GTPases, Miro GTPases and RHOBTB3 (R-SSC-9716542)	149	+	3.95E-06
Cellular responses to stimuli (R-SSC-8953897)	124	+	4.57E-06
Cellular responses to stress (R-SSC-2262752)	124	+	4.57E-06
GTP hydrolysis and joining of the 60S ribosomal subunit (R-SSC-72706)	26	+	9.76E-06
Unclassified (UNCLASSIFIED)	2175	-	1.29E-05
SRP-dependent cotranslational protein targeting to membrane (R-SSC-1799339)	28	+	1.53E-05
Cell Cycle, Mitotic (R-SSC-69278)	90	+	3.36E-05
Signal Transduction (R-SSC-162582)	447	+	4.83E-05
Translation (R-SSC-72766)	67	+	7.89E-05
Neutrophil degranulation (R-SSC-6798695)	156	+	1.54E-04
Transcriptional Regulation by TP53 (R-SSC-3700989)	66	+	1.80E-04
Class I MHC mediated antigen processing & presentation (R-SSC-983169)	82	+	4.28E-04
Generic Transcription Pathway (R-SSC-212436)	176	+	8.46E-04
Antigen processing: Ubiquitination & Proteasome degradation (R-SSC-983168)	69	+	1.21E-03
Deubiquitination (R-SSC-5688426)	65	+	1.28E-03
Fc epsilon receptor (FCERI) signaling (R-SSC-2454202)	39	+	1.43E-03
M Phase (R-SSC-68886)	68	+	2.09E-03
RHO GTPase cycle (R-SSC-9012999)	101	+	4.56E-03
RHO GTPase Effectors (R-SSC-195258)	62	+	5.63E-03
Programmed Cell Death (R-SSC-5357801)	41	+	7.21E-03
Cytokine Signaling in Immune system (R-SSC-1280215)	96	+	1.30E-02
Death Receptor Signalling (R-SSC-73887)	27	+	1.30E-02
Deadenylation of mRNA (R-SSC-429947)	9	+	1.43E-02
Vesicle-mediated transport (R-SSC-5653656)	121	+	1.86E-02
Membrane Trafficking (R-SSC-199991)	118	+	3.50E-02
Transport of Mature Transcript to Cytoplasm (R-SSC-72202)	18	+	3.61E-02
mRNA 3'-end processing (R-SSC-72187)	16	+	3.68E-02
Regulation of TP53 Activity (R-SSC-5633007)	41	+	3.74E-02
Apoptosis (R-SSC-109581)	29	+	4.50E-02
TCR signaling (R-SSC-202403)	34	+	4.98E-02
